Transcript: lnc-RGPD6-1:2

Basic information

LNCipedia transcript ID: lnc-RGPD6-1:2 
LNCipedia gene ID: lnc-RGPD6-1
Location (hg38): chr2:110447535-110448893
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 710 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_1919_chr2:111205111-111206470_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.154 non-coding 
CPAT coding probability 7.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGPD6-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIMS3L-1:1
4.0 lnc-LIMS3L-1:1
4.1 lnc-LIMS3L-1:1
5.0 lnc-LIMS3L-1:1
5.1 lnc-EN1-86:1
5.2 lnc-RGPD6-1:2