Transcript: lnc-RGPD4-3:3

Basic information

LNCipedia transcript ID: lnc-RGPD4-3:3 
LNCipedia gene ID: lnc-RGPD4-3
Ensembl Gene ID: ENSG00000225588
Ensembl Transcript ID: ENST00000413708
Location (hg38): chr2:107362319-107407329
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 616 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002970; ENST00000413708; ENST00000413708.1; AC096669.1-001; OTTHUMT00000330059.1; NONHSAT073060
Alternative gene names: XLOC_001618; linc-RGPD4-3; ENSG00000225588; AC096669.1; ENSG00000225588.2; OTTHUMG00000153144.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.8038 non-coding 
CPAT coding probability 12.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGPD4-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGPD4-3:3
3.1 lnc-RGPD4-3:3
4.0 lnc-RGPD4-3:3
4.1 lnc-RGPD4-3:3
5.0 lnc-RGPD4-3:3
5.1 lnc-SULT1C2-8:3
5.2 lnc-RGPD4-3:3