Transcript: lnc-RGMA-24:1

Basic information

LNCipedia transcript ID: lnc-RGMA-24:1 
LNCipedia gene ID: lnc-RGMA-24
Ensembl Gene ID: ENSG00000270017
Ensembl Transcript ID: ENST00000602330
Location (hg38): chr15:94855586-94857011
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 475 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT050167; ENST00000602330.1
Alternative gene names: ENSG00000270017.1; CTD-2576F9.2; AC107976.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -202.7298 non-coding 
CPAT coding probability 9.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGMA-24:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC016251.1-24:1
4.0 lnc-AC016251.1-24:1
4.1 lnc-AC016251.1-24:1
5.0 lnc-AC016251.1-24:1
5.1 lnc-CIB1-50:1
5.2 lnc-RGMA-24:1