Transcript: lnc-RGL4-4:4

Basic information

LNCipedia transcript ID: lnc-RGL4-4:4 
LNCipedia gene ID: lnc-RGL4-4
Location (hg38): chr22:23509563-23515225
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3880 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029529; NONHSAT083896
Alternative gene names: XLOC_014172; linc-RGL4-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.2567 non-coding 
CPAT coding probability 80.04% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RGL4-4:4 no no no no

Available literature

  1. Silva (2015), The Clinical Relevance of Long Non-Coding RNAs in Cancer., Cancers (Basel)
  2. Tang (2015), Circulation long non-coding RNAs act as biomarkers for predicting tumorigenesis and metastasis in hepatocellular carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGL4-4:4
3.1 lnc-RGL4-4:4
4.0 lnc-RGL4-4:4
4.1 lnc-RGL4-4:4
5.0 lnc-RGL4-4:4
5.1 lnc-SLC2A11-15:4
5.2 lnc-RGL4-4:4