Transcript: lnc-RGL4-2:1

Basic information

LNCipedia transcript ID: lnc-RGL4-2:1 
LNCipedia gene ID: lnc-RGL4-2
Ensembl Gene ID: ENSG00000224277
Ensembl Transcript ID: ENST00000454863
Location (hg38): chr22:23567064-23573122
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 569 bp
Exons: 5
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029370; ENST00000454863.1; AP000345.2-002; OTTHUMT00000319536.1; NONHSAT083900; ENST00000454863.4
Alternative gene names: XLOC_014175; linc-RGL4-3; ENSG00000224277.1; AP000345.2; OTTHUMG00000150666.1; ENSG00000224277.5; AP000345.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.9446 non-coding 
CPAT coding probability 3.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGL4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGL4-2:1
3.1 lnc-RGL4-2:1
4.0 lnc-RGL4-2:1
4.1 lnc-RGL4-2:1
5.0 lnc-RGL4-2:1
5.1 lnc-SLC2A11-12:1
5.2 lnc-RGL4-2:1