Transcript: lnc-RFXAP-1:1

Basic information

LNCipedia transcript ID: lnc-RFXAP-1:1 
LNCipedia gene ID: lnc-RFXAP-1
Location (hg38): chr13:36849366-36850046
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 504 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000437983.1; SMAD9-AS1-001; OTTHUMT00000044544.1; NONHSAT033215
Alternative gene names: ENSG00000236711.1; SMAD9-AS1; OTTHUMG00000016743.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.6324 non-coding 
CPAT coding probability 2.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RFXAP-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RFXAP-1:1
4.0 lnc-RFXAP-1:1
4.1 lnc-RFXAP-1:1
5.0 lnc-RFXAP-1:1
5.1 lnc-KL-30:1
5.2 lnc-RFXAP-1:1