Transcript: lnc-RDM1-1:4

Basic information

LNCipedia transcript ID: lnc-RDM1-1:4 
LNCipedia gene ID: lnc-RDM1-1
Ensembl Gene ID: ENSG00000270977
Ensembl Transcript ID: ENST00000604907
Location (hg38): chr17:35893707-35911023
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5473 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000587132.1; ENST00000604907.1
Alternative gene names: ENSG00000266999.1; AC015849.16; ENSG00000270977.1; AC015849.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.8465 non-coding 
CPAT coding probability 98.27% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RDM1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RDM1-1:4
4.0 lnc-RDM1-1:4
4.1 lnc-RDM1-1:4
5.0 lnc-RDM1-1:4
5.1 lnc-SRCIN1-73:3
5.2 lnc-RDM1-1:4