Transcript: lnc-RBPMS2-1:2

Basic information

LNCipedia transcript ID: lnc-RBPMS2-1:2 
LNCipedia gene ID: lnc-RBPMS2-1
Location (hg38): chr15:64691434-64700590
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 264 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000559555.1; RP11-330L19.4-007; OTTHUMT00000418713.1; NONHSAT046682
Alternative gene names: ENSG00000259526.1; RP11-330L19.4; OTTHUMG00000172474.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.4888 non-coding 
CPAT coding probability 2.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBPMS2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBPMS2-1:2
4.0 lnc-RBPMS2-1:2
4.1 lnc-RBPMS2-1:2
5.0 lnc-RBPMS2-1:2
5.1 lnc-TIPIN-51:4
5.2 lnc-RBPMS2-1:2