Transcript: lnc-RBPMS2-1:1

Basic information

LNCipedia transcript ID: lnc-RBPMS2-1:1 
LNCipedia gene ID: lnc-RBPMS2-1
Location (hg38): chr15:64690167-64703194
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 707 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000560837.1; RP11-330L19.4-006; OTTHUMT00000418712.1; NONHSAT046679
Alternative gene names: ENSG00000259526.1; RP11-330L19.4; OTTHUMG00000172474.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score 0.8723 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RBPMS2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBPMS2-1:1
4.0 lnc-RBPMS2-1:1
4.1 lnc-RBPMS2-1:1
5.0 lnc-RBPMS2-1:1
5.1 lnc-TIPIN-51:3
5.2 lnc-RBPMS2-1:1