Transcript: lnc-RBP5-3:2

Basic information

LNCipedia transcript ID: lnc-RBP5-3:2 
LNCipedia gene ID: lnc-RBP5-3
Ensembl Gene ID: ENSG00000276144
Ensembl Transcript ID: ENST00000619522
Location (hg38): chr12:7115736-7116486
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 751 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000619522.1
Alternative gene names: ENSG00000276144.1; ABC12-49244600F4.4; AC233309.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -9.886 non-coding 
CPAT coding probability 5.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBP5-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RBP5-3:2
4.1 lnc-RBP5-3:2
5.0 lnc-RBP5-3:2
5.1 lnc-CHD4-48:2
5.2 lnc-RBP5-3:2