Transcript: lnc-RBP5-2:2

Basic information

LNCipedia transcript ID: lnc-RBP5-2:2 
LNCipedia gene ID: lnc-RBP5-2
Ensembl Gene ID: ENSG00000255572
Ensembl Transcript ID: ENST00000545794
Location (hg38): chr12:7169785-7189024
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 490 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545794.1; RP11-273B20.3-002; OTTHUMT00000398610.1; NONHSAT026241
Alternative gene names: ENSG00000255572.1; RP11-273B20.3; OTTHUMG00000168174.1; AC018653.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.6487 non-coding 
CPAT coding probability 2.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBP5-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBP5-2:2
4.0 lnc-RBP5-2:2
4.1 lnc-RBP5-2:2
5.0 lnc-RBP5-2:2
5.1 lnc-CHD4-51:5
5.2 lnc-RBP5-2:2