Transcript: lnc-RBP5-1:4

Basic information

LNCipedia transcript ID: lnc-RBP5-1:4 
LNCipedia gene ID: lnc-RBP5-1
Location (hg38): chr12:7129081-7130017
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 512 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00021281
Alternative gene names: XLOC_010001; linc-RBP5-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.9051 non-coding 
CPAT coding probability 34.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBP5-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RBP5-1:2
3.1 lnc-RBP5-1:4
4.0 lnc-RBP5-1:4
4.1 lnc-RBP5-1:4
5.0 lnc-RBP5-1:4
5.1 lnc-CHD4-49:5
5.2 lnc-RBP5-1:4