Transcript: lnc-RBP5-1:1

Basic information

LNCipedia transcript ID: lnc-RBP5-1:1 
LNCipedia gene ID: lnc-RBP5-1
Ensembl Gene ID: ENSG00000256967
Ensembl Transcript ID: ENST00000538062
Location (hg38): chr12:7129508-7131198
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 735 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538062.1; RP11-273B20.1-001; OTTHUMT00000398559.1; NONHSAT026239
Alternative gene names: ENSG00000256967.1; RP11-273B20.1; OTTHUMG00000168166.1; AC018653.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.6487 non-coding 
CPAT coding probability 8.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBP5-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBP5-1:1
4.0 lnc-RBP5-1:1
4.1 lnc-RBP5-1:1
5.0 lnc-RBP5-1:1
5.1 lnc-CHD4-49:1
5.2 lnc-RBP5-1:1