Transcript: lnc-RBBP6-1:5

Basic information

LNCipedia transcript ID: lnc-RBBP6-1:5 
LNCipedia gene ID: lnc-RBBP6-1
Location (hg38): chr16:24704560-24710225
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5246 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000505247; TCONS_00024285; NONHSAT141165
Alternative gene names: ENSG00000249217; XLOC_011677; linc-TNRC6A-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.9131 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBBP6-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNRC6A-1:1
3.1 lnc-TNRC6A-1:1
4.0 lnc-TNRC6A-1:1
4.1 lnc-TNRC6A-1:1
5.0 lnc-TNRC6A-1:1
5.1 lnc-SGF29-54:2
5.2 lnc-RBBP6-1:5