Transcript: lnc-RASGEF1B-1:4

Basic information

LNCipedia transcript ID: lnc-RASGEF1B-1:4 
LNCipedia gene ID: lnc-RASGEF1B-1
Location (hg38): chr4:81459479-82044244
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 516 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000512716.1; RP11-689K5.3-001; OTTHUMT00000363618.1; NONHSAT097150
Alternative gene names: ENSG00000251331.1; RP11-689K5.3; OTTHUMG00000161063.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.8185 non-coding 
CPAT coding probability 31.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RASGEF1B-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASGEF1B-1:4
4.0 lnc-RASGEF1B-1:4
4.1 lnc-RASGEF1B-1:4
5.0 lnc-RASGEF1B-1:4
5.1 lnc-TMEM150C-13:4
5.2 lnc-RASGEF1B-1:4