Transcript: lnc-RARRES2-2:1

Basic information

LNCipedia transcript ID: lnc-RARRES2-2:1 
LNCipedia gene ID: lnc-RARRES2-2
Ensembl Gene ID: ENSG00000240449
Ensembl Transcript ID: ENST00000488310
Location (hg38): chr7:150363777-150372590
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 577 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000488310.1; RP4-584D14.5-001; OTTHUMT00000350674.1; NONHSAT124111
Alternative gene names: ENSG00000240449.1; RP4-584D14.5; OTTHUMG00000158322.1; AC005586.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -293.2449 non-coding 
CPAT coding probability 5.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RARRES2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RARRES2-2:1
4.0 lnc-RARRES2-2:1
4.1 lnc-RARRES2-2:1
5.0 lnc-RARRES2-2:1
5.1 lnc-KMT2C-50:2
5.2 lnc-RARRES2-2:1