Transcript: lnc-RARB-1:1

Basic information

LNCipedia transcript ID: lnc-RARB-1:1 
LNCipedia gene ID: lnc-RARB-1
Ensembl Gene ID: ENSG00000237838
Ensembl Transcript ID: ENST00000455576
Location (hg38): chr3:24687919-25174305
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 584 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455576; ENST00000455576.1; AC133680.1-001; OTTHUMT00000341068.2; NONHSAT088703
Alternative gene names: ENSG00000237838; AC133680.1; ENSG00000237838.1; OTTHUMG00000155664.2; AC092422.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.9905 non-coding 
CPAT coding probability 3.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RARB-1:1 no no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RARB-1:1
3.1 lnc-RARB-1:1
4.0 lnc-RARB-1:1
4.1 lnc-RARB-1:1
5.0 lnc-RARB-1:1
5.1 lnc-CMC1-25:1
5.2 lnc-RARB-1:1