Transcript: lnc-RAP1GDS1-5:1

Basic information

LNCipedia transcript ID: lnc-RAP1GDS1-5:1 
LNCipedia gene ID: lnc-RAP1GDS1-5
Ensembl Gene ID: ENSG00000253170
Ensembl Transcript ID: ENST00000517407
Location (hg38): chr4:97120701-97135059
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 525 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517407; ENST00000517407.1; RP11-431J17.1-001; OTTHUMT00000381035.1; NONHSAT097476
Alternative gene names: ENSG00000253170; RP11-431J17.1; ENSG00000253170.1; OTTHUMG00000164937.1; AC108515.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.6138 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAP1GDS1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAP1GDS1-3:1
3.1 lnc-RAP1GDS1-5:1
4.0 lnc-RAP1GDS1-5:1
4.1 lnc-RAP1GDS1-5:1
5.0 lnc-RAP1GDS1-5:1
5.1 lnc-C4orf17-28:1
5.2 lnc-RAP1GDS1-5:1