Transcript: lnc-RABGAP1-1:2

Basic information

LNCipedia transcript ID: lnc-RABGAP1-1:2 
LNCipedia gene ID: lnc-RABGAP1-1
Location (hg38): chr9:122937623-122940326
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1994 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000561961.1; RP11-355O1.11-002; OTTHUMT00000430302.1; NONHSAT134603
Alternative gene names: ENSG00000261094.1; RP11-355O1.11; OTTHUMG00000175504.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.0431 non-coding 
CPAT coding probability 7.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RABGAP1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RABGAP1-1:2
4.0 lnc-RABGAP1-1:2
4.1 lnc-RABGAP1-1:2
5.0 lnc-RABGAP1-1:2
5.1 lnc-DAB2IP-24:4
5.2 lnc-RABGAP1-1:2