Transcript: lnc-RABEPK-1:1

Basic information

LNCipedia transcript ID: lnc-RABEPK-1:1 
LNCipedia gene ID: lnc-RABEPK-1
Location (hg38): chr9:125285598-125286719
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 604 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000458261.1; RP11-65N13.7-001; OTTHUMT00000054069.1; NONHSAT134731
Alternative gene names: ENSG00000227452.1; RP11-65N13.7; OTTHUMG00000020677.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.9032 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RABEPK-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RABEPK-1:1
4.0 lnc-RABEPK-1:1
4.1 lnc-RABEPK-1:1
5.0 lnc-RABEPK-1:1
5.1 lnc-DAB2IP-54:1
5.2 lnc-RABEPK-1:1