Transcript: lnc-RAB3GAP2-4:1

Basic information

LNCipedia transcript ID: lnc-RAB3GAP2-4:1 
LNCipedia gene ID: lnc-RAB3GAP2-4
Location (hg38): chr1:220662471-220663116
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 590 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000446040.1; RP11-322F10.2-001; OTTHUMT00000090920.1; NONHSAT009614
Alternative gene names: ENSG00000225782.1; RP11-322F10.2; OTTHUMG00000037359.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.6027 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB3GAP2-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC096644.1-3:1
4.0 lnc-AC096644.1-3:1
4.1 lnc-AC096644.1-3:1
5.0 lnc-AC096644.1-3:1
5.1 lnc-LEFTY2-73:1
5.2 lnc-RAB3GAP2-4:1