Transcript: lnc-RAB33B-4:1

Basic information

LNCipedia transcript ID: lnc-RAB33B-4:1 
LNCipedia gene ID: lnc-RAB33B-4
Ensembl Gene ID: ENSG00000272717
Ensembl Transcript ID: ENST00000608402
Location (hg38): chr4:139556799-139557643
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 845 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608402.1
Alternative gene names: ENSG00000272717.1; RP11-342I1.2; AC112236.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.1453 non-coding 
CPAT coding probability 24.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB33B-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAB33B-4:1
4.0 lnc-RAB33B-4:1
4.1 lnc-RAB33B-4:1
5.0 lnc-RAB33B-4:1
5.1 lnc-NAA15-6:2
5.2 lnc-RAB33B-4:1