Transcript: lnc-R3HCC1-5:1

Basic information

LNCipedia transcript ID: lnc-R3HCC1-5:1 
LNCipedia gene ID: lnc-R3HCC1-5
Location (hg38): chr8:23355542-23360018
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4477 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000253837.1|ENCT00000423024.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -24.8665 non-coding 
CPAT coding probability 2.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-R3HCC1-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-R3HCC1-5:1
5.0 lnc-R3HCC1-5:1
5.1 lnc-RHOBTB2-21:1
5.2 lnc-R3HCC1-5:1