Transcript: lnc-QPRT-3:2

Basic information

LNCipedia transcript ID: lnc-QPRT-3:2 
LNCipedia gene ID: lnc-QPRT-3
Location (hg38): chr16:29668442-29670518
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2077 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000561857.1; RP11-368N21.4-001; OTTHUMT00000435670.1; NONHSAT141621
Alternative gene names: ENSG00000260043.1; RP11-368N21.4; OTTHUMG00000177155.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.9438 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-QPRT-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZG16-3:1
4.0 lnc-ZG16-3:1
4.1 lnc-ZG16-3:1
5.0 lnc-ZG16-3:1
5.1 lnc-QPRT-3:1
5.2 lnc-QPRT-3:2