Transcript: lnc-PYDC2-1:2

Basic information

LNCipedia transcript ID: lnc-PYDC2-1:2 
LNCipedia gene ID: lnc-PYDC2-1
Location (hg38): chr3:191557163-191591857
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2640 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006348; NONHSAT093971
Alternative gene names: XLOC_002968; linc-HRASLS-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.8847 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PYDC2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PYDC2-1:1
3.1 lnc-PYDC2-1:2
4.0 lnc-PYDC2-1:2
4.1 lnc-PYDC2-1:2
5.0 lnc-PYDC2-1:2
5.1 lnc-MUC20-53:7
5.2 lnc-PYDC2-1:2