Transcript: lnc-PYDC2-1:11

Basic information

LNCipedia transcript ID: lnc-PYDC2-1:11 
LNCipedia gene ID: lnc-PYDC2-1
Ensembl Gene ID: ENSG00000223812
Ensembl Transcript ID: ENST00000642133
Location (hg38): chr3:191425527-191591097
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 2253 bp
Exons: 10
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000642133.1
Alternative gene names: ENSG00000223812.6; AC073365.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 3.6949 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PYDC2-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-MUC20-53:3
5.1 lnc-MUC20-53:3
5.2 lnc-PYDC2-1:11