Transcript: lnc-PTRH1-3:1

Basic information

LNCipedia transcript ID: lnc-PTRH1-3:1 
LNCipedia gene ID: lnc-PTRH1-3
Ensembl Gene ID: ENSG00000279571
Ensembl Transcript ID: ENST00000624141
Location (hg38): chr9:127690098-127690840
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 743 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624141.1
Alternative gene names: ENSG00000279571.1; RP11-56D16.8; ENSG00000279571.2; MIR3911; ENSG00000279571.3; AL162426.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -90.1345 non-coding 
CPAT coding probability 8.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTRH1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PTRH1-3:1
4.1 lnc-PTRH1-3:1
5.0 lnc-PTRH1-3:1
5.1 lnc-SPOUT1-56:1
5.2 lnc-PTRH1-3:1