Transcript: lnc-PTPRU-20:1

Basic information

LNCipedia transcript ID: lnc-PTPRU-20:1 
LNCipedia gene ID: lnc-PTPRU-20
Ensembl Gene ID: ENSG00000284676
Ensembl Transcript ID: ENST00000641702
Location (hg38): chr1:29755175-29790597
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1953 bp
Exons: 5
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000641702.1
Alternative gene names: ENSG00000284676.1; AL645944.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -22.8705 non-coding 
CPAT coding probability 13.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPRU-20:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-RAB42-20:1
5.1 lnc-RAB42-20:1
5.2 lnc-PTPRU-20:1