Transcript: lnc-PTPRG-1:6

Basic information

LNCipedia transcript ID: lnc-PTPRG-1:6 
LNCipedia gene ID: lnc-PTPRG-1
Location (hg38): chr3:61251597-61316583
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3755 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000060349.1|MICT00000244355.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -111.647 non-coding 
CPAT coding probability 3.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPRG-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PTPRG-1:6
5.0 lnc-PTPRG-1:6
5.1 lnc-ATXN7-25:4
5.2 lnc-PTPRG-1:6