Transcript: lnc-PTPRE-1:1

Basic information

LNCipedia transcript ID: lnc-PTPRE-1:1 
LNCipedia gene ID: lnc-PTPRE-1
Ensembl Gene ID: ENSG00000280953
Ensembl Transcript ID: ENST00000630252
Location (hg38): chr10:128181136-128317726
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3086 bp
Exons: 7
Sources: Broad Institute; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017722; NONHSAT016972; ENST00000630252.1
Alternative gene names: XLOC_008662; linc-MGMT-4; ENSG00000280953.2; LINC01163; AL390763.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.9597 non-coding 
CPAT coding probability 14.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPRE-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPRE-1:1
3.1 lnc-PTPRE-1:1
4.0 lnc-PTPRE-1:1
4.1 lnc-PTPRE-1:1
5.0 lnc-PTPRE-1:1
5.1 lnc-PTPRE-1:1
5.2 lnc-PTPRE-1:1