Transcript: lnc-PTPN14-11:1

Basic information

LNCipedia transcript ID: lnc-PTPN14-11:1 
LNCipedia gene ID: lnc-PTPN14-11
Ensembl Gene ID: ENSG00000283518
Ensembl Transcript ID: ENST00000637598
Location (hg38): chr1:214051194-214187773
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2074 bp
Exons: 5
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637598.1
Alternative gene names: ENSG00000283518.1; RP11-53A1.3; AL592287.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 39.4661 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPN14-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PTPN14-11:1
5.0 lnc-PTPN14-11:1
5.1 lnc-IRF6-65:1
5.2 lnc-PTPN14-11:1