Transcript: lnc-PTN-2:13

Basic information

LNCipedia transcript ID: lnc-PTN-2:13 
LNCipedia gene ID: lnc-PTN-2
Location (hg38): chr7:136743804-136746984
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 333 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013979; NONHSAT123557
Alternative gene names: XLOC_006618; linc-MTPN-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.196 non-coding 
CPAT coding probability 2.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTN-2:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTN-3:1
3.1 lnc-PTN-3:1
4.0 lnc-PTN-2:13
4.1 lnc-PTN-2:13
5.0 lnc-PTN-2:13
5.1 lnc-C7orf49-29:13
5.2 lnc-PTN-2:13