Transcript: lnc-PTN-1:1

Basic information

LNCipedia transcript ID: lnc-PTN-1:1 
LNCipedia gene ID: lnc-PTN-1
Location (hg38): chr7:137344930-137354483
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00013265; ENST00000438969; ENST00000438969.1; AC078842.3-001; OTTHUMT00000341338.1; NONHSAT123581
Alternative gene names: XLOC_006620; linc-PTN; ENSG00000228031; AC078842.3; ENSG00000228031.1; OTTHUMG00000155708.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.8897 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTN-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTN-1:1
3.1 lnc-PTN-1:1
4.0 lnc-PTN-1:1
4.1 lnc-PTN-1:1
5.0 lnc-PTN-1:1
5.1 lnc-ZC3HAV1L-16:1
5.2 lnc-PTN-1:1