Transcript: lnc-PTK2B-2:2

Basic information

LNCipedia transcript ID: lnc-PTK2B-2:2 
LNCipedia gene ID: lnc-PTK2B-2
Ensembl Gene ID: ENSG00000253903
Ensembl Transcript ID: ENST00000521869
Location (hg38): chr8:27086076-27087783
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 815 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521869.2
Alternative gene names: ENSG00000253903.2; RP11-521M14.2; AC090150.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -218.8465 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTK2B-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-521M14.2.1-2:1
4.1 lnc-RP11-521M14.2.1-2:1
5.0 lnc-RP11-521M14.2.1-2:1
5.1 lnc-WRN-85:1
5.2 lnc-PTK2B-2:2