Transcript: lnc-PTGS1-2:1

Basic information

LNCipedia transcript ID: lnc-PTGS1-2:1 
LNCipedia gene ID: lnc-PTGS1-2
Location (hg38): chr9:122403407-122448977
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 830 bp
Exons: 6
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015746; ENST00000433572.1; RP11-542K23.7-001; OTTHUMT00000053941.1; NONHSAT134583
Alternative gene names: XLOC_007554; linc-OR1J2; ENSG00000229245.1; RP11-542K23.7; OTTHUMG00000020611.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.0765 non-coding 
CPAT coding probability 1.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTGS1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTGS1-1:1
3.1 lnc-PTGS1-1:1
4.0 lnc-PTGS1-1:1
4.1 lnc-PTGS1-1:1
5.0 lnc-PTGS1-1:1
5.1 lnc-DAB2IP-15:1
5.2 lnc-PTGS1-2:1