Transcript: lnc-PTGFR-1:2

Basic information

LNCipedia transcript ID: lnc-PTGFR-1:2 
LNCipedia gene ID: lnc-PTGFR-1
Location (hg38): chr1:78223642-78292535
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 606 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000999; NONHSAT004069
Alternative gene names: XLOC_000264; linc-PTGFR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -239.7868 non-coding 
CPAT coding probability 22.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTGFR-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTGFR-1:2
3.1 lnc-PTGFR-1:2
4.0 lnc-PTGFR-1:2
4.1 lnc-PTGFR-1:2
5.0 lnc-PTGFR-1:2
5.1 lnc-GIPC2-4:2
5.2 lnc-PTGFR-1:2