Transcript: lnc-PTGFR-1:13

Basic information

LNCipedia transcript ID: lnc-PTGFR-1:13 
LNCipedia gene ID: lnc-PTGFR-1
Location (hg38): chr1:78229622-78369464
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1170 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237413.1|ENST00000413519.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -10.4792 non-coding 
CPAT coding probability 22.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTGFR-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PTGFR-1:13
5.0 lnc-PTGFR-1:13
5.1 lnc-GIPC2-4:12
5.2 lnc-PTGFR-1:13