Transcript: lnc-PSMG3-1:3

Basic information

LNCipedia transcript ID: lnc-PSMG3-1:3 
LNCipedia gene ID: lnc-PSMG3-1
Location (hg38): chr7:1543830-1545779
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 409 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000421996.1; AC093734.14-001; OTTHUMT00000322726.1; NONHSAT118734
Alternative gene names: ENSG00000241340.1; AC093734.14; OTTHUMG00000151455.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.626 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMG3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM184A-1:2
4.0 lnc-TMEM184A-1:2
4.1 lnc-TMEM184A-1:2
5.0 lnc-TMEM184A-1:2
5.1 lnc-PRKAR1B-33:3
5.2 lnc-PSMG3-1:3