Transcript: lnc-PSMC2-1:1

Basic information

LNCipedia transcript ID: lnc-PSMC2-1:1 
LNCipedia gene ID: lnc-PSMC2-1
Ensembl Gene ID: ENSG00000234715
Ensembl Transcript ID: ENST00000422488
RefSeq ID: NR_110141
Location (hg38): chr7:103445207-103514007
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2725 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000422488; ENST00000422488.1; CTB-107G13.1-001; OTTHUMT00000348025.1; NONHSAT122556; NR_110141; NR_110141.1
Alternative gene names: ENSG00000234715; CTB-107G13.1; ENSG00000234715.1; OTTHUMG00000157225.1; AC005064.1; LOC101927870


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.4648 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMC2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSMC2-1:1
3.1 lnc-PSMC2-1:1
4.0 lnc-PSMC2-1:1
4.1 lnc-PSMC2-1:1
5.0 lnc-PSMC2-1:1
5.1 lnc-ORAI2-11:1
5.2 lnc-PSMC2-1:1