Transcript: lnc-PSMA2-1:9

Basic information

LNCipedia transcript ID: lnc-PSMA2-1:9 
LNCipedia gene ID: lnc-PSMA2-1
Ensembl Gene ID: ENSG00000232006
Ensembl Transcript ID: ENST00000631050
Location (hg38): chr7:42972681-43073404
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 427 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000631050.2
Alternative gene names: ENSG00000232006.8; AC005537.2; AC005537.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -383.0823 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMA2-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PSMA2-1:9
4.1 lnc-PSMA2-1:9
5.0 lnc-PSMA2-1:9
5.1 lnc-TNS3-80:9
5.2 lnc-PSMA2-1:9