Transcript: lnc-PRSS23-2:1

Basic information

LNCipedia transcript ID: lnc-PRSS23-2:1 
LNCipedia gene ID: lnc-PRSS23-2
Ensembl Gene ID: ENSG00000255250
Ensembl Transcript ID: ENST00000532979
Location (hg38): chr11:86727355-86765265
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 503 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532979; ENST00000532979.1; CTD-2005H7.2-001; OTTHUMT00000393803.1; NONHSAT023492
Alternative gene names: ENSG00000255250; CTD-2005H7.2; ENSG00000255250.1; OTTHUMG00000167225.1; AP003059.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.0046 non-coding 
CPAT coding probability 6.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRSS23-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRSS23-2:1
3.1 lnc-PRSS23-2:1
4.0 lnc-PRSS23-2:1
4.1 lnc-PRSS23-2:1
5.0 lnc-PRSS23-2:1
5.1 lnc-TRIM77-22:1
5.2 lnc-PRSS23-2:1