Transcript: lnc-PRRT1-1:3

Basic information

LNCipedia transcript ID: lnc-PRRT1-1:3 
LNCipedia gene ID: lnc-PRRT1-1
Ensembl Gene ID: ENSG00000284954
Ensembl Transcript ID: ENST00000498575
RefSeq ID: NR_037172
Location (hg38): chr6:32152802-32154365
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 548 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT108885; NR_037172; ENST00000498575.1; NR_037172.1
Alternative gene names: ENSG00000284954.1; AL662884.3; LOC100507547


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.265 non-coding 
CPAT coding probability 3.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRRT1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGPAT1-1:2
4.0 lnc-AGPAT1-1:2
4.1 lnc-AGPAT1-1:2
5.0 lnc-AGPAT1-1:2
5.1 lnc-DXO-6:3
5.2 lnc-PRRT1-1:3