Transcript: lnc-PRRC2B-2:2

Basic information

LNCipedia transcript ID: lnc-PRRC2B-2:2 
LNCipedia gene ID: lnc-PRRC2B-2
Location (hg38): chr9:131324793-131347079
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1138 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016201; NONHSAT135206
Alternative gene names: XLOC_007591; linc-BAT2L1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.2771 non-coding 
CPAT coding probability 1.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRRC2B-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPAPDC3-2:1
3.1 lnc-PPAPDC3-2:1
4.0 lnc-PPAPDC3-2:1
4.1 lnc-PPAPDC3-2:1
5.0 lnc-PPAPDC3-2:1
5.1 lnc-RPL7A-31:1
5.2 lnc-PRRC2B-2:2