Transcript: lnc-PRR26-4:1

Basic information

LNCipedia transcript ID: lnc-PRR26-4:1 
LNCipedia gene ID: lnc-PRR26-4
Ensembl Gene ID: ENSG00000231601
Ensembl Transcript ID: ENST00000412695
Location (hg38): chr10:743992-744958
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 424 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017754; ENST00000412695; ENST00000412695.1; RP11-164C1.2-001; OTTHUMT00000046388.1; NONHSAT010873
Alternative gene names: XLOC_008335; linc-GTPBP4-3; ENSG00000231601; RP11-164C1.2; ENSG00000231601.1; OTTHUMG00000017531.1; AL157709.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.8784 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRR26-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf108-2:1
3.1 lnc-C10orf108-4:1
4.0 lnc-C10orf108-4:1
4.1 lnc-C10orf108-4:1
5.0 lnc-C10orf108-4:1
5.1 lnc-NPY4R2-552:1
5.2 lnc-PRR26-4:1