Transcript: lnc-PRR11-2:1

Basic information

LNCipedia transcript ID: lnc-PRR11-2:1 
LNCipedia gene ID: lnc-PRR11-2
Ensembl Gene ID: ENSG00000263938
Ensembl Transcript ID: ENST00000582080
Location (hg38): chr17:58965952-58966727
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 776 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582080.1; RP11-579O24.3-001; OTTHUMT00000445459.1; NONHSAT054988
Alternative gene names: ENSG00000263938.1; RP11-579O24.3; OTTHUMG00000179249.1; AC100832.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.7007 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRR11-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRR11-2:1
4.0 lnc-PRR11-2:1
4.1 lnc-PRR11-2:1
5.0 lnc-PRR11-2:1
5.1 lnc-PRR11-6:1
5.2 lnc-PRR11-2:1