Transcript: lnc-PRKCH-3:2

Basic information

LNCipedia transcript ID: lnc-PRKCH-3:2 
LNCipedia gene ID: lnc-PRKCH-3
Ensembl Gene ID: ENSG00000232774
Ensembl Transcript ID: ENST00000556569
Location (hg38): chr14:61570596-61654713
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1312 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556569.4
Alternative gene names: ENSG00000232774.7; FLJ22447; AL355916.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -172.6434 non-coding 
CPAT coding probability 28.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKCH-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-47I22.3.1-3:3
4.1 lnc-RP11-47I22.3.1-3:3
5.0 lnc-RP11-47I22.3.1-3:3
5.1 lnc-ACTR10-60:3
5.2 lnc-PRKCH-3:2