Transcript: lnc-PRKCH-3:1

Basic information

LNCipedia transcript ID: lnc-PRKCH-3:1 
LNCipedia gene ID: lnc-PRKCH-3
RefSeq ID: NR_039985
Location (hg38): chr14:61570540-61654713
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1368 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_039985; NR_039985.1
Alternative gene names: FLJ22447


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.6434 non-coding 
CPAT coding probability 28.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKCH-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIF1A-3:1
4.0 lnc-RP11-47I22.3.1-3:1
4.1 lnc-RP11-47I22.3.1-3:1
5.0 lnc-RP11-47I22.3.1-3:1
5.1 lnc-ACTR10-60:1
5.2 lnc-PRKCH-3:1