Transcript: lnc-PRKCE-3:2

Basic information

LNCipedia transcript ID: lnc-PRKCE-3:2 
LNCipedia gene ID: lnc-PRKCE-3
Location (hg38): chr2:45610634-45636719
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 738 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000042652.1|MICT00000188808.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -43.4296 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKCE-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PRKCE-3:2
5.0 lnc-PRKCE-3:2
5.1 lnc-EPAS1-6:1
5.2 lnc-PRKCE-3:2