Transcript: lnc-PRKAA2-2:2

Basic information

LNCipedia transcript ID: lnc-PRKAA2-2:2 
LNCipedia gene ID: lnc-PRKAA2-2
Location (hg38): chr1:56235096-56235793
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 213 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00002040
Alternative gene names: XLOC_000213; linc-PRKAA2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -280.7758 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKAA2-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRKAA2-2:2
3.1 lnc-PRKAA2-2:2
4.0 lnc-PRKAA2-2:2
4.1 lnc-PRKAA2-2:2
5.0 lnc-PRKAA2-2:2
5.1 lnc-MROH7-TTC4-18:2
5.2 lnc-PRKAA2-2:2