Transcript: lnc-PRIM2-7:10

Basic information

LNCipedia transcript ID: lnc-PRIM2-7:10 
LNCipedia gene ID: lnc-PRIM2-7
Location (hg38): chr6:57965630-57972218
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 301 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000420759; ENST00000420759.1; XXbac-BPG55C20.7-001; OTTHUMT00000041060.1; NONHSAT113320
Alternative gene names: ENSG00000225096; XXbac-BPG55C20.7; ENSG00000225096.1; OTTHUMG00000014930.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.9811 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRIM2-7:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BAG2-3:1
3.1 lnc-BAG2-6:1
4.0 lnc-BAG2-6:1
4.1 lnc-BAG2-7:8
5.0 lnc-BAG2-7:8
5.1 lnc-HCRTR2-21:10
5.2 lnc-PRIM2-7:10